From c6820ae8ce13b56cfe56ca59351358915f05d318 Mon Sep 17 00:00:00 2001
From: Your Name <you@example.com>
Date: Wed, 29 Jul 2026 08:25:34 -0400
Subject: [PATCH 1/9] Bump Version

---
 cecli/__init__.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/cecli/__init__.py b/cecli/__init__.py
index 45c3b410f3d..000258ef690 100644
--- a/cecli/__init__.py
+++ b/cecli/__init__.py
@@ -1,6 +1,6 @@
 from packaging import version
 
-__version__ = "1.0.2.dev"
+__version__ = "1.0.3.dev"
 safe_version = __version__
 
 try:

From dbb496122f345d9ec98160a6c35ba678e3e2f13f Mon Sep 17 00:00:00 2001
From: Your Name <you@example.com>
Date: Wed, 29 Jul 2026 08:29:20 -0400
Subject: [PATCH 2/9] rstrip TUI selected text since Textual includes trailing
 spaces in the segments in the line iterator

---
 cecli/tui/widgets/selectable_log.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/cecli/tui/widgets/selectable_log.py b/cecli/tui/widgets/selectable_log.py
index f4c85feffbf..4b54b5fa8e2 100644
--- a/cecli/tui/widgets/selectable_log.py
+++ b/cecli/tui/widgets/selectable_log.py
@@ -96,7 +96,7 @@ def get_selected_text(self, copy=False) -> str | None:
         lines = []
         for i in range(lo, hi + 1):
             text = "".join(seg.text for seg in self.lines[i] if seg.text)
-            lines.append(text)
+            lines.append(text.rstrip())
 
         text = "\n".join(lines)
         if not copy:

From b32250b2b15f8346e78dd3f38c9328fade3471a9 Mon Sep 17 00:00:00 2001
From: Your Name <you@example.com>
Date: Wed, 29 Jul 2026 17:54:49 -0400
Subject: [PATCH 3/9] #624: Fix security_config parsing so URLs can be parsed
 in commands

---
 cecli/coders/base_coder.py | 6 +++++-
 cecli/helpers/io_proxy.py  | 6 ++++++
 cecli/tui/worker.py        | 2 ++
 3 files changed, 13 insertions(+), 1 deletion(-)

diff --git a/cecli/coders/base_coder.py b/cecli/coders/base_coder.py
index 8ec70e7c8c7..beb8d44c71d 100755
--- a/cecli/coders/base_coder.py
+++ b/cecli/coders/base_coder.py
@@ -464,9 +464,13 @@ def __init__(
         self.abs_root_path_cache = {}
 
         self.auto_copy_context = auto_copy_context
-        self.security_config = security_config or {}
         self.auto_accept_architect = auto_accept_architect
 
+        try:
+            self.security_config = json.loads(security_config)
+        except (json.JSONDecodeError, TypeError):
+            self.security_config = {} 
+
         self.ignore_mentions = ignore_mentions
         if not self.ignore_mentions:
             self.ignore_mentions = set()
diff --git a/cecli/helpers/io_proxy.py b/cecli/helpers/io_proxy.py
index bc6ce8aa475..cee66e7d876 100644
--- a/cecli/helpers/io_proxy.py
+++ b/cecli/helpers/io_proxy.py
@@ -6,6 +6,7 @@
 """
 
 import asyncio
+import logging
 import queue as _queue
 import weakref
 from typing import TYPE_CHECKING, Any, Generic, TypeVar
@@ -15,6 +16,7 @@
 
 T = TypeVar("T")
 
+logger = logging.getLogger(__name__)
 
 class IOProxy(Generic[T]):
     """Facade wrapping an InputOutput instance with coder context.
@@ -218,6 +220,10 @@ async def stop_output_task(self):
         state = self._per_coder.get(self._coder_uuid, {})
         task = state.get("output_task")
         if task:
+            e = task.exception()
+            if e:
+                logger.error(e, exc_info=True)
+
             try:
                 task.cancel()
                 await task
diff --git a/cecli/tui/worker.py b/cecli/tui/worker.py
index 4b28fcf7e89..6ad917b8fda 100644
--- a/cecli/tui/worker.py
+++ b/cecli/tui/worker.py
@@ -107,6 +107,8 @@ async def _async_run(self):
                 await self._handle_switch_coder_signal(switch)
                 # Continue the loop with the new coder
             except Exception as e:
+                logger.error(e, exc_info=True)
+
                 self.output_queue.put(
                     {
                         "type": "error",

From 098c8cbb681f92c39bee9ce1ab4f37eb9c53b49e Mon Sep 17 00:00:00 2001
From: Your Name <you@example.com>
Date: Wed, 29 Jul 2026 17:57:10 -0400
Subject: [PATCH 4/9] Fix formatting

---
 cecli/coders/base_coder.py | 2 +-
 cecli/helpers/io_proxy.py  | 1 +
 2 files changed, 2 insertions(+), 1 deletion(-)

diff --git a/cecli/coders/base_coder.py b/cecli/coders/base_coder.py
index beb8d44c71d..f7c3b3c2419 100755
--- a/cecli/coders/base_coder.py
+++ b/cecli/coders/base_coder.py
@@ -469,7 +469,7 @@ def __init__(
         try:
             self.security_config = json.loads(security_config)
         except (json.JSONDecodeError, TypeError):
-            self.security_config = {} 
+            self.security_config = {}
 
         self.ignore_mentions = ignore_mentions
         if not self.ignore_mentions:
diff --git a/cecli/helpers/io_proxy.py b/cecli/helpers/io_proxy.py
index cee66e7d876..4a2cf7165e3 100644
--- a/cecli/helpers/io_proxy.py
+++ b/cecli/helpers/io_proxy.py
@@ -18,6 +18,7 @@
 
 logger = logging.getLogger(__name__)
 
+
 class IOProxy(Generic[T]):
     """Facade wrapping an InputOutput instance with coder context.
 

From 092f8da7fb846d33ab43eac918dd92bdb5b65d4c Mon Sep 17 00:00:00 2001
From: Your Name <you@example.com>
Date: Wed, 29 Jul 2026 19:06:02 -0400
Subject: [PATCH 5/9] Use pyperclip to make textual copy to the system
 clibboard and its internal ledger on internal copy

---
 cecli/tui/app.py | 13 +++++++++++++
 1 file changed, 13 insertions(+)

diff --git a/cecli/tui/app.py b/cecli/tui/app.py
index 991d94bc19e..9182abe0a5c 100644
--- a/cecli/tui/app.py
+++ b/cecli/tui/app.py
@@ -745,6 +745,19 @@ def enable_input(self, msg, coder=None):
 
         input_area.focus()
 
+    def copy_to_clipboard(self, text: str) -> None:
+        import pyperclip
+
+        try:
+            pyperclip.copy(text)
+            self._clipboard = text
+        except Exception:  # pragma: no cover - system clipboard errors
+            self.worker.coder.io.tool_error("Failed to copy to system clipboard.")
+            self.worker.coder.io.tool_output(
+                "You may need to install xclip, xsel, or wl-clipboard on Linux, or pbcopy on macOS."
+            )
+            super().copy_to_clipboard(text)
+
     def update_spinner(self, msg, agent_name: str | None = None):
         """Update spinner in footer."""
         footer = self.query_one(MainFooter)

From 37d2395e31f84bacd170f104fa07df8ba3e066bf Mon Sep 17 00:00:00 2001
From: Your Name <you@example.com>
Date: Wed, 29 Jul 2026 19:06:53 -0400
Subject: [PATCH 6/9] Don't crash on Textual out of bounds recalculation error
 onfirst input/undo cycle

---
 cecli/tui/widgets/input_area.py | 19 +++++++++++++++++++
 1 file changed, 19 insertions(+)

diff --git a/cecli/tui/widgets/input_area.py b/cecli/tui/widgets/input_area.py
index 453e96ecd90..198dd70dd84 100644
--- a/cecli/tui/widgets/input_area.py
+++ b/cecli/tui/widgets/input_area.py
@@ -395,3 +395,22 @@ def on_text_area_changed(self, event) -> None:
 
             if val.startswith("/") or "@" in val or possible_path or self.completion_active:
                 self.post_message(self.CompletionRequested(val))
+
+    def _refresh_size(self) -> None:
+        """Refresh size, clamping cursor to document bounds first.
+
+        Workaround for a Textual bug where undo of a multi-line paste leaves
+        cursor_location pointing to a line that no longer exists after undo,
+        causing a ValueError when _refresh_size triggers scroll_cursor_visible.
+        """
+        try:
+            doc_line_count = self.document.line_count
+            cursor_row, cursor_col = self.cursor_location
+            if cursor_row >= doc_line_count:
+                clamped_row = max(0, doc_line_count - 1)
+                line_text = self.document.get_line(clamped_row)
+                clamped_col = min(cursor_col, len(line_text))
+                self.cursor_location = (clamped_row, clamped_col)
+        except (ValueError, IndexError, AttributeError):
+            pass
+        super()._refresh_size()

From f52e1be6d351b489404d3cb745dc43249162766a Mon Sep 17 00:00:00 2001
From: Your Name <you@example.com>
Date: Wed, 29 Jul 2026 22:28:01 -0400
Subject: [PATCH 7/9] Propagate encryted reasoning content back to responses
 api models

---
 cecli/helpers/requests.py | 9 +++++++++
 cecli/llm.py              | 9 +++++++++
 2 files changed, 18 insertions(+)

diff --git a/cecli/helpers/requests.py b/cecli/helpers/requests.py
index b092cc842ba..db947ca9c39 100644
--- a/cecli/helpers/requests.py
+++ b/cecli/helpers/requests.py
@@ -15,6 +15,15 @@ def add_reasoning_content(messages):
             msg["reasoning_content"] = ""
         if msg.get("provider_specific_fields", None):
             msg["provider_specific_fields"].pop("reasoning_content", None)
+
+            if (
+                msg["provider_specific_fields"].get("reasoning_items", None) is not None
+                and msg.get("reasoning_items", None) is None
+            ):
+                msg["reasoning_items"] = msg["provider_specific_fields"].pop(
+                    "reasoning_items", None
+                )
+
     return messages
 
 
diff --git a/cecli/llm.py b/cecli/llm.py
index edd264a241a..c344bb6b264 100644
--- a/cecli/llm.py
+++ b/cecli/llm.py
@@ -108,6 +108,15 @@ def _patched_delta_init(self_delta, *args, **kwargs):
             # Intercept and map 'reasoning_text' to 'reasoning_content'
             if kwargs.get("reasoning_content") is None and "reasoning_text" in kwargs:
                 kwargs["reasoning_content"] = kwargs.pop("reasoning_text", None)
+
+            if kwargs.get("reasoning_items", None) is not None:
+                if kwargs.get("provider_specific_fields") is None:
+                    kwargs["provider_specific_fields"] = {}
+
+                kwargs["provider_specific_fields"]["reasoning_items"] = kwargs.pop(
+                    "reasoning_items", None
+                )
+
             # Pass the modified kwargs to the original __init__
             _original_delta_init(self_delta, *args, **kwargs)
 

From 9e0171095862589a67e6fe6bf00bedd0f2076b2c Mon Sep 17 00:00:00 2001
From: Your Name <you@example.com>
Date: Wed, 29 Jul 2026 22:48:14 -0400
Subject: [PATCH 8/9] Forward all reasoning_* non completions compliant
 parameters back at top level to improve agent performance and up the cache
 hit ratio for github_copilot

---
 cecli/helpers/requests.py | 18 ++++++++++++++++++
 cecli/llm.py              | 16 ++++++++++++++++
 2 files changed, 34 insertions(+)

diff --git a/cecli/helpers/requests.py b/cecli/helpers/requests.py
index db947ca9c39..7953c96bb1d 100644
--- a/cecli/helpers/requests.py
+++ b/cecli/helpers/requests.py
@@ -13,6 +13,7 @@ def add_reasoning_content(messages):
     for msg in messages:
         if msg.get("role") == "assistant" and "reasoning_content" not in msg:
             msg["reasoning_content"] = ""
+
         if msg.get("provider_specific_fields", None):
             msg["provider_specific_fields"].pop("reasoning_content", None)
 
@@ -23,6 +24,23 @@ def add_reasoning_content(messages):
                 msg["reasoning_items"] = msg["provider_specific_fields"].pop(
                     "reasoning_items", None
                 )
+                msg["reasoning_content"] = ""
+
+            if (
+                msg["provider_specific_fields"].get("reasoning_text", None) is not None
+                and msg.get("reasoning_text", None) is None
+            ):
+                msg["reasoning_text"] = msg["provider_specific_fields"].pop("reasoning_text", None)
+                msg["reasoning_content"] = ""
+
+            if (
+                msg["provider_specific_fields"].get("reasoning_opaque", None) is not None
+                and msg.get("reasoning_opaque", None) is None
+            ):
+                msg["reasoning_opaque"] = msg["provider_specific_fields"].pop(
+                    "reasoning_opaque", None
+                )
+                msg["reasoning_content"] = ""
 
     return messages
 
diff --git a/cecli/llm.py b/cecli/llm.py
index c344bb6b264..594f81da78f 100644
--- a/cecli/llm.py
+++ b/cecli/llm.py
@@ -109,6 +109,22 @@ def _patched_delta_init(self_delta, *args, **kwargs):
             if kwargs.get("reasoning_content") is None and "reasoning_text" in kwargs:
                 kwargs["reasoning_content"] = kwargs.pop("reasoning_text", None)
 
+            if kwargs.get("reasoning_text", None) is not None:
+                if kwargs.get("provider_specific_fields") is None:
+                    kwargs["provider_specific_fields"] = {}
+
+                kwargs["provider_specific_fields"]["reasoning_text"] = kwargs.pop(
+                    "reasoning_text", None
+                )
+
+            if kwargs.get("reasoning_opaque", None) is not None:
+                if kwargs.get("provider_specific_fields") is None:
+                    kwargs["provider_specific_fields"] = {}
+
+                kwargs["provider_specific_fields"]["reasoning_opaque"] = kwargs.pop(
+                    "reasoning_opaque", None
+                )
+
             if kwargs.get("reasoning_items", None) is not None:
                 if kwargs.get("provider_specific_fields") is None:
                     kwargs["provider_specific_fields"] = {}

From 5038e236caf93a4959f78d90be36dd1235cd86c9 Mon Sep 17 00:00:00 2001
From: Your Name <you@example.com>
Date: Thu, 30 Jul 2026 03:37:06 -0400
Subject: [PATCH 9/9] Don't add tracebakc for SwitchCoderSignal, and remove
 reasoning content when one of the other reasoning types is passed in

---
 cecli/helpers/io_proxy.py | 8 ++++----
 cecli/helpers/requests.py | 6 +++---
 2 files changed, 7 insertions(+), 7 deletions(-)

diff --git a/cecli/helpers/io_proxy.py b/cecli/helpers/io_proxy.py
index 4a2cf7165e3..bc5754f4e1a 100644
--- a/cecli/helpers/io_proxy.py
+++ b/cecli/helpers/io_proxy.py
@@ -221,10 +221,6 @@ async def stop_output_task(self):
         state = self._per_coder.get(self._coder_uuid, {})
         task = state.get("output_task")
         if task:
-            e = task.exception()
-            if e:
-                logger.error(e, exc_info=True)
-
             try:
                 task.cancel()
                 await task
@@ -241,6 +237,10 @@ async def stop_output_task(self):
                 IndexError,
                 RuntimeError,
             ):
+                e = task.exception()
+                if e:
+                    logger.error(e, exc_info=True)
+
                 import traceback
 
                 traceback_str = traceback.format_exc()
diff --git a/cecli/helpers/requests.py b/cecli/helpers/requests.py
index 7953c96bb1d..84634906f95 100644
--- a/cecli/helpers/requests.py
+++ b/cecli/helpers/requests.py
@@ -24,14 +24,14 @@ def add_reasoning_content(messages):
                 msg["reasoning_items"] = msg["provider_specific_fields"].pop(
                     "reasoning_items", None
                 )
-                msg["reasoning_content"] = ""
+                msg.pop("reasoning_content", None)
 
             if (
                 msg["provider_specific_fields"].get("reasoning_text", None) is not None
                 and msg.get("reasoning_text", None) is None
             ):
                 msg["reasoning_text"] = msg["provider_specific_fields"].pop("reasoning_text", None)
-                msg["reasoning_content"] = ""
+                msg.pop("reasoning_content", None)
 
             if (
                 msg["provider_specific_fields"].get("reasoning_opaque", None) is not None
@@ -40,7 +40,7 @@ def add_reasoning_content(messages):
                 msg["reasoning_opaque"] = msg["provider_specific_fields"].pop(
                     "reasoning_opaque", None
                 )
-                msg["reasoning_content"] = ""
+                msg.pop("reasoning_content", None)
 
     return messages